Madlung Lab Publications

(Puget Sound students and alumni are italicized)

Carlson, KD, Bhogale, S, Anderson, D, Zaragoza-Mendoza, A, Madlung, A. Subfunctionalization of phytochrome B1/B2 leads to differential auxin and photosynthetic responses. (2020) Plant Direct 4(2): e00205. (Full text)

Carlson, KD, Bhogale, S, Anderson, D, Tomanek, L, Madlung, A. Phytochrome A regulates carbon flux in dark grown tomato seedlings. (2019) Frontiers in Plant Science 10(152) (Full text)

Madlung, A. Assessing an effective undergraduate module teaching applied bioinformatics to biology students. (2018) PLoS Computational Biology 14(1): e1005872. (Full text)

Carlson, KD, Fernandez-Pozo, N, Bombarely, A, Pisupati, R,  Mueller, LM, and Madlung, A: Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica  (2017) BMC Genomics 18:653 (Full text)

Solhaug, EM., Ihinger, J, Jost, M, Gamboa, V, Marchant, B, Bradford, D, Doerge, RW, Tyagi, A, Replogle, A, Madlung, A: Environmental regulation of heterosis in allopolyploid Arabidopsis suecica. (2016) Plant Physiology 170: 2251-2263, doi:10.1104/pp.16.00052  (Full text)

Asbe, A, Matsushita, SC, Gordon, SG, Kirkpatrick, HE, Madlung, A: Floral reversion in Arabidopsis suecica is correlated with the onset of flowering and meristem transitioning. (2015) PLoS ONE 10(5): e0127897. doi:10.1371/journal.pone.012  (Full Text)

Madlung, A: Genome Structure and Gene Expression. Chapter 2 (2015) In: Plant Physiology and Development, Taiz, L, Zeiger, E, Møller, I, Murphy, A. (eds.), Sinauer, 6th ed, 51-79 (link)

Bomblies, K, Madlung, A: Polyploidy in the Arabidopsis genus. (2014), Chromosome Research 22(2), 117-134 (Abstract)

Madlung, A, Wendel, JF: Genetic and epigenetic aspects of polyploid evolution in plants. (2013) Cytogenetic and Genome Research 140, 270-285 (Abstract)

Madlung, A: Polyploidy and its effect on evolutionary success: old questions revisited with new tools. (2013) Heredity, 110, 99-104 (Abstract)

Matsushita, SC, Tyagi, AP, Thornton, GM, Pires, JC, Madlung, A: Allopolyploidization lays the foundation for evolution of distinct populations: evidence from analysis of synthetic Arabidopsis allohexaploids. (2012) Genetics, 191, 535-547 (Abstract)

Madlung, A, Henkhaus, N, Jurevic, L, Kahsai, EA, Bernhard, J: Natural variation and persistent developmental instabilities in geographically diverse accessions of the allopolyploid Arabidopsis suecica. (2012) Physiologia Plantarum 144: 123–133 (Abstract)

Madlung, A, Bremer, M, Himelblau, E, Tullis, A: A study assessing the potential of negative effects in interdisciplinary math-biology instruction. (2011) CBE Life Science Education, 10, 43-54 (Abstract)

Pignatta, D, Dilkes, B, Yoo, SY, Henry, IM, Madlung, A, Doerge, RW, Chen, ZJ, Comai, L: Differential sensitivity of the Arabodopsis thaliana transcriptome and enhancers to the effects of genome doubling (2010) New Phytologist, 186, 194-206 (Abstract)

McCullough, E, Wright, KM, Alvarez, A, Clark, CP, Rickoll, WL, Madlung, A: Photoperiod-dependent floral reversion in the natural allopolyploid Arabidopsis suecica (2010) New Phytologist, 186, 239-250 (Abstract)

Madlung, A: Genome Organization and Gene Expression. Chapter 2 (2010) In: Plant Physiology, Taiz, L and Zeiger, E (eds.), Sinauer, 5th ed, 35-61

Bremer, M, Himelblau, E, Madlung, A: Introduction to the Statistical Analysis of Two-Color Microarray Data. (2010) In: Statistical Methods in Molecular Biology, Bang, H, Zhou, XK, Epps, HLV, Mazumdar, M (eds.), Humana Press, 285-311 (Abstract)

Wright, KM, Pires, JC, Madlung, A: Mitotic instability in resynthesized and natural polyploids of the genus Arabidopsis (Brassicaceae), (2009) American Journal of Botany, 96, 1656-1664 (Abstract)

Wang, J, Tian, L, Lee, HS, Wei, NE, Jiang, H, Watson, B, Madlung, A, Osborn, TC, Doerge, RW, Comai, L, & Chen, ZJ. Genome-wide non-additive gene regulation in Arabidopsis allotetraploids. (2006) Genetics, 172, 507-517 (Abstract)

Madlung, A, Tyagi, AP, Watson, B, Jiang, H, Kagochi, T, Doerge, RW, Martienssen, R, Comai, L: Genomic changes in Arabidopsis polyploids (2005) The Plant Journal, 41, 221-230 (Abstract)

Pontes, O, Neves, N, Silva, M, Lewis, MS, Madlung, A, Comai, L, Viegas W, Pikaard, CS: Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome (2004) Proceedings of the National Academy of Sciences (PNAS), 101,  52, 18240-18245 (Abstract)

Madlung, A, Comai, L: The effect of stress on genome regulation and structure. (2004) Annals of Botany, 94: 481-495 (Abstract)

Wang, J, Tian, L, Madlung, A, Lee, HS, Chen, M, Lee, JJ, Watson, B, Kagochi, T, Comai, L, Chen, ZJ: Stochastic and epigenetic changes of gene expression in Arabidopsispolyploids (2004) Genetics, 167, 1961-1973 (Abstract)

Comai, L, Madlung, A, Josefsson, C, Tyagi, A: Do the different “heteromes” cause genomic shock in newly formed allopolyploids? (2003), Philosophical Transactions of the Royal Society of London, 358, 1149-1155 (Abstract)

Osborn, TC, Pires, JC, Birchler, JA, Auger, D, Chen, ZJ, Lee, HS, Comai, L, Madlung, A, Doerge, RW, Colot, V, Martienssen, RA:  (2003) Understanding mechanisms of novel gene expression in polyploids (2003), Trends in Genetics, 19 (3), 141-147 (Abstract)

Madlung, A, Masuelli, R, Watson, B, Reynolds, S, Comai, L: Remodeling of DNA Methylation and Phenotypic and Transcriptional Changes in Synthetic Arabidopsis Allotetraploids. (2002) Plant Physiology, 129, 733-746 (Abstract)

Madlung, A, Behringer, F, Lomax, T: Ethylene plays multiple non-primary roles in modulating the gravitropic response in tomato. (1999) Plant Physiology, 120 (3), 897-906 (Abstract)

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